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1

Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches

Perez-Carrasco, Ruben, Guerrero, Pilar, Briscoe, James, Page, Karen M., Tusscher, Ten

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.96 MB

english, 2016

2

Minimum Action Path Theory Reveals the Details of Stochastic Transitions Out of Oscillatory States

de la Cruz, Roberto, Perez-Carrasco, Ruben, Guerrero, Pilar, Alarcon, Tomas, Page, Karen M.

Journal:

Physical Review Letters

Year:

2018

Language:

english

File:

PDF, 2.97 MB

english, 2018

3

A Catch-Bond Drives Stator Mechanosensitivity in the Bacterial Flagellar Motor

Nord, Ashley L., Gachon, Emilie, Perez-Carrasco, Ruben, Nirody, Jasmine, Barducci, Alessandro, Berry, Richard M., Pedaci, Francesco

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 45 KB

english, 2018

4

Neuronal differentiation influences progenitor arrangement in the vertebrate neuroepithelium

Guerrero, Pilar, Perez-Carrasco, Ruben, Zagorski, Marcin, Page, David, Kicheva, Anna, Briscoe, James, Page, Karen M.

Journal:

Development (The Company of Biologists)

Year:

2019

File:

PDF, 7.44 MB

2019

5

Theoretical Analysis of the F1-ATPase Experimental Data

Perez-Carrasco, Ruben, Sancho, J.M.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 462 KB

english, 2010

6

A statistical approach reveals designs for the most robust stochastic gene oscillators

Woods, Mae L, Leon, Miriam, Perez-Carrasco, Ruben, Barnes, Chris P

Journal:

ACS Synthetic Biology

Year:

2016

Language:

english

File:

PDF, 1.43 MB

english, 2016

7

Mathematical models help explain experimental data. Response to ‘Transcriptional interpretation of Shh morphogen signaling: computational modeling validates empirically established models’

Cohen, Michael, Page, Karen M., Perez-Carrasco, Ruben, Barnes, Chris P., Briscoe, James

Journal:

Development (The Company of Biologists)

Year:

2016

Language:

english

File:

PDF, 384 KB

english, 2016

8

Catch bond drives stator mechanosensitivity in the bacterial flagellar motor

Nord, Ashley L, Gachon, Emilie, Perez-Carrasco, Ruben, Nirody, Jasmine A., Barducci, Alessandro, Berry, Richard M., Pedaci, Francesco

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

9

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors

Perez-Carrasco, Ruben, Barnes, Chris P., Schaerli, Yolanda, Isalan, Mark, Briscoe, James, Page, Karen M.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.63 MB

english, 2018

10

Deterministic and Stochastic Study for a Microscopic Angiogenesis Model: Applications to the Lewis Lung Carcinoma

Bodnar, Marek, Guerrero, Pilar, Perez-Carrasco, Ruben, Piotrowska, Monika J., Lythe, Grant

Journal:

Year:

2016

Language:

english

File:

PDF, 3.07 MB

english, 2016

11

Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks

Page, Karen M., Perez-Carrasco, Ruben

Journal:

Journal of The Royal Society Interface

Year:

2018

Language:

english

File:

PDF, 731 KB

english, 2018

12

de la Cruz et al. Reply

de la Cruz, Roberto, Perez-Carrasco, Ruben, Guerrero, Pilar, Alarcon, Tomas, Page, Karen M.

Journal:

Physical Review Letters

Year:

2019

File:

PDF, 567 KB

2019

13

de la Cruz et al. Reply

de la Cruz, Roberto, Perez-Carrasco, Ruben, Guerrero, Pilar, Alarcon, Tomas, Page, Karen M.

Journal:

Physical Review Letters

Year:

2019

Language:

english

File:

PDF, 567 KB

english, 2019

14

A multiscale model of epigenetic heterogeneity-driven cell fate decision-making

Folguera-Blasco, Núria, Pérez-Carrasco, Rubén, Cuyàs, Elisabet, Menendez, Javier A., Alarcón, Tomás, Komarova, Natalia L.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 5.17 MB

2019

15

Exact solution of stochastic gene expression models with bursting, cell cycle and replication dynamics

Beentjes, Casper H. L., Perez-Carrasco, Ruben, Grima, Ramon

Journal:

Physical Review E

Year:

2020

File:

PDF, 1.26 MB

2020

16

Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance

Perez-Carrasco, Ruben, Beentjes, Casper, Grima, Ramon

Journal:

Journal of The Royal Society Interface

Year:

2020

File:

PDF, 1.82 MB

2020

17

Species-specific pace of development is associated with differences in protein stability

Rayon, Teresa, Stamataki, Despina, Perez-Carrasco, Ruben, Garcia-Perez, Lorena, Barrington, Christopher, Melchionda, Manuela, Exelby, Katherine, Lazaro, Jorge, Tybulewicz, Victor L. J., Fisher, Elizab

Journal:

Year:

2020

File:

PDF, 8.77 MB

2020